PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N00052.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family CAMTA
Protein Properties Length: 918aa    MW: 103845 Da    PI: 7.2489
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N00052.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1164.22.2e-51261432118
              CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                       ++e k+rwl+++ei+aiL n++ ++++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ pt
  Migut.N00052.1.p  26 MEEaKARWLRPNEIHAILYNHKCFTVHVKPMNLPKSGAILLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNSERIHVYYAHGEHSPT 118
                       45669**************************************************************************************** PP

              CG-1  94 fqrrcywlLeeelekivlvhylevk 118
                       f rrcywlL+++le+ivlvhy+e++
  Migut.N00052.1.p 119 FVRRCYWLLDKSLEHIVLVHYRETQ 143
                       **********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.5122148IPR005559CG-1 DNA-binding domain
SMARTSM010761.0E-7425143IPR005559CG-1 DNA-binding domain
PfamPF038599.9E-4628141IPR005559CG-1 DNA-binding domain
SuperFamilySSF812962.8E-10371456IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.201.3E-16553666IPR020683Ankyrin repeat-containing domain
CDDcd002041.83E-15553663No hitNo description
PfamPF127961.3E-7553633IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.87E-16553667IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.326562675IPR020683Ankyrin repeat-containing domain
SMARTSM002489.1E-6604633IPR002110Ankyrin repeat
PROSITE profilePS5008811.915604636IPR002110Ankyrin repeat
SMARTSM002482000643674IPR002110Ankyrin repeat
SuperFamilySSF525403.72E-5750815IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.035752778IPR000048IQ motif, EF-hand binding site
SMARTSM0001572767789IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.272768797IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0054790812IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.048791815IPR000048IQ motif, EF-hand binding site
PfamPF006125.8E-5792811IPR000048IQ motif, EF-hand binding site
SMARTSM0001515871893IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.72E-5871897IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500968.279873901IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 918 aa     Download sequence    Send to blast
MESNRLVGSE IHGFHTMEDL DFVNMMEEAK ARWLRPNEIH AILYNHKCFT VHVKPMNLPK  60
SGAILLFDRK MLRNFRKDGH NWKKKKDGKT VKEAHEHLKV GNSERIHVYY AHGEHSPTFV  120
RRCYWLLDKS LEHIVLVHYR ETQELQGSPT TPGNSNSSSV ASDPSASWPL LEKSDSTVDR  180
VYEGDKRSLL ERDNSTTVEN HEQRLHEINT LEWDELLVPE QQENAASSEL TNLYLTCSFK  240
TMDDALSTNK ASPESSGDSF SGHVSGSTSI DYNVARNIPY QTAAHETIMN LQSFNSGLGP  300
LGGRNSIENP AKDHFKKLDS FEKWMTDIIA DSPGSVDNQT LESSFSTEHQ SFKSSTMDNH  360
LLSAVDQIFS ITDVSPSWAL STEETKILVV GFFNGQLPDT DFHLYLACGD SVVPVEVVQA  420
GVFRMVIPAQ TPGLVNLYLT FDGHKPISQV WPFEFRAPVV PHKTISSDDK PNWEEFQLQM  480
RLAHLLFSSD SLNIFSNKVS QNALKEAKIF AQRTAHIPNG WVHLTKLIQD AKVPFPQAKD  540
SLFELTLQNR LQEWLLEKVV SGCKIPERDE QGQGVIHLCA ILGYTWAVLP FSLSGLSMDY  600
RDKSGWTALH WAAYQGREKM VAALLSAGAK PNLVTDPTSA HPGGCTAADV ASKNGFDGLA  660
AYLAEKALVA QFNDMTLAGN VSGSLQITSN ETMDPGNFTE DELYLKDTLA AYRTAADAAA  720
RIHSAFREHS LSVRTRAVEA SNPEMEARNI VAAMKIQHAF RNYETRKQMA AAARIQYRFR  780
TWKMRRNFIN MRRHAIKIQA VFRGFQVRKH YCKILWSVGV VEKAILRWRK KRKGFRGLQV  840
QKSDEQDTPT PKDPNVEEDF FLASRKQAED RVERSVIRVQ AMFRSKQAQE DYRRMKLEHN  900
KATLEYEELL HPDVNMG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840434.10.0PREDICTED: calmodulin-binding transcription activator 5-like isoform X1
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A022RYH30.0A0A022RYH3_ERYGU; Uncharacterized protein
STRINGVIT_05s0077g01240.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45652232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators